eBooking in the USA

[dreamcatchings]

My Kindle arrived yesterday. With the help of a friend at work I decided to name him Lucien Nepenthe. Lucien being, of course, the librarian of the Library of Dreams from Sandman and Nepenthe means "one that chases away sorrow." It seemed perfect to me, especially with the two put together. I have already found and formatted quite a number of real books for it, but I sort of want to put fanfiction on it. We're talking older fanfiction that probably isn't on Fanfic.net. I've seen some programs on the internet that are supposed to help automatically configure stories on Fanfic.net to work with ebook readers, but I haven't seen anything yet for independent sites. Other than going through and saving them all individually as PDFs does anyone know a better way?